Project publications

  • The contribution of bacterial genome engineering to sustainable development Reuß D, Commichau F, Stülke J. Microbial Biotechnology 2017 vol: 10 (5) pp: 1259-1263 DOI 10.1111/1751-7915.12784

  • Bioremediation 3.0: Engineering pollutant-removing bacteria in the times of systemic biology Dvořák P, Nikel P, Damborský J, de Lorenzo V. Biotechnology Advances 2017 vol: 35 (7) pp: 845-866 DOI 10.1016/J.BIOTECHADV.2017.08.001

  • CalFitter: a web server for analysis of protein thermal denaturation data Mazurenko S, Stourac J, Kunka A, Nedeljković S, Bednar D et. al. Nucleic Acids Research 2018 vol: 46 (W1) pp: W344-W349 DOI 10.1093/nar/gky358

  • HotSpot Wizard 3.0: web server for automated design of mutations and smart libraries based on sequence input information Sumbalova L, Stourac J, Martinek T, Bednar D, Damborsky J, Nucleic Acids Research 2018 gky417.

  • BAGEL4: a user-friendly web server to thoroughly mine RiPPs and bacteriocins van Heel A, de Jong A, Song C, Viel J, Kok J et. al. Nucleic Acids Research 2018 vol: 46 (W1) pp: W278-W281 DOI 10.1093/nar/gky383

  • Haloalkane Dehalogenases From Marine Organisms Kunka A, Damborsky J, Prokop Z. Methods in Enzymology 2018 605: 203-251.  DOI 10.1016/bs.mie.2018.03.005

  • Less is more: towards a genome-reduced Bacillus cell factory for ‘difficult proteins’ Aguilar Suarez R, Stülke J, van Dijl J, ACS Synthetic Biology, 2018 DOI 10.1021/acssynbio.8b00342

  • Microbial cell factories for the sustainable manufacturing of B vitamins Acevedo-Rocha C, Gronenberg L, Mack M, Commichau F, Genee H. Current Opinion in Biotechnology 2019 vol: 56 pp: 18-29 DOI 10.1016/J.COPBIO.2018.07.006

Other relevant publications from our partners

  • Membrane Microdomain Disassembly Inhibits MRSA Antibiotic Resistance García-Fernández E, Koch G,Wagner R, Fekete A, Stengel S et. al. Cell 2017 vol: 171 (6) pp: 1354-1367.e20 DOI 10.1016/j.cell.2017.10.012

  • A two-step evolutionary process establishes a non-native vitamin B6 pathway in Bacillus subtilis Rosenberg J, Yeak K, Commichau F. Environmental Microbiology 2018 vol: 20 (1) pp: 156-168 DOI 10.1111/1462-2920.13950

  • Harnessing Underground Metabolism for Pathway Development. Rosenberg J, Commichau F. Trends in biotechnology 2018 vol: 0 (0) DOI10.1016/j.tibtech.2018.08.001

Software and tools

Design of mutations and smart libraries in protein engineering

Analysis of protein thermal denaturation data

Mine RiPPs and bacteriocins


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